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Carlos Oliver Homepage

I am a project leader at the Department of Machine Learning and Systems Biology at the Max Planck Institute of Biochemistry, based in Munich, Germany. Formerly postdoc at ETH Zurich and a member of the labs of Jérôme Waldispühl and William L. Hamilton during my PhD studies in Computer Science.
I build algorithms that help us understand network data (often biological). More on my research here.
I build algorithms that help us understand network data (often biological). More on my research here.
Contact
- Academic: oliver@biochem.mpg.de
- Business & Personal: carlos@ozeki.io
- GitHub: @cgoliver
Updates
- Preprint on RNA drug discovery bioRxiv
- Paper on Multimodal learning for antimicrobial bacteria resistance accepted at Bioinformatics! Preprint coming soon..
- ProteinShake accepted at NeurIPS 2023 Datasets and Benchmarks! Preprint coming soon..
- Open position PhD in my research group at the Max Planck Institute. [More info]
- Joint multidimensional scaling accepted at ICLR 2023! [ArXiV]
- McGill University School of Computer Science Colloquium talk on algorithms for molecular structure-function mapping. [slides]
- Preprint on graph neural networks for motif mining. [ArXiV]
- RNAglib, python package for ML on RNA 2.5D graphs is published in Bioinformatics Journal.
- Fuzzy network motif mining paper has been published at Bioinformatics.
Fields of study
- RNA and protein computational structural biology
- Structural bioinformatics
- Network motif mining
- Graph representation learning
- Drug discovery
Activities
- Google Scholar
- Consulting at Ozeki Inc.
- Pear Review
- Former Lead Scientist in Residence at Next AI
- Member of The Heterodox Academy
Reviewing (by topic)
- Bio(informatics): OUP Bioinformatics, ISMB, RECOMB, Nucleic Acids Research
- Machine Learning: Journal of Machine Learning Research, AAAI, NeurIPS
- Data Mining: KDD, IEEE Transactions on Emerging Topics in Computing, SIAM International Conference on Data Mining
- Cheminformatics: Nature Communications Chemistry, Journal of Cheminformatics
Software
- rnaglib: analysis and deep learning on RNA 2.5D and 3D models (Homepage, Source Code)
- proteinshake: deep learning on protein 3D structures (Homepage, Source Code)
PGP Public Key
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"It is the glory of God to conceal a matter; to search out a matter is the glory of kings."
-- Proverbs 25:2